libpappsomspp
Library for mass spectrometry
tracedetectionmoulon.h
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1/*******************************************************************************
2 * Copyright (c) 2015 Olivier Langella <Olivier.Langella@moulon.inra.fr>.
3 *
4 * This file is part of the PAPPSOms++ library.
5 *
6 * PAPPSOms++ is free software: you can redistribute it and/or modify
7 * it under the terms of the GNU General Public License as published by
8 * the Free Software Foundation, either version 3 of the License, or
9 * (at your option) any later version.
10 *
11 * PAPPSOms++ is distributed in the hope that it will be useful,
12 * but WITHOUT ANY WARRANTY; without even the implied warranty of
13 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
14 * GNU General Public License for more details.
15 *
16 * You should have received a copy of the GNU General Public License
17 * along with PAPPSOms++. If not, see <http://www.gnu.org/licenses/>.
18 *
19 * Contributors:
20 * Olivier Langella <Olivier.Langella@moulon.inra.fr> - initial API and
21 *implementation
22 ******************************************************************************/
23
24#pragma once
25
26
28#include "../../processing/filters/filtermorpho.h"
29
30namespace pappso
31{
32
33
35{
36 private:
40
41 public:
42 TraceDetectionMoulon(unsigned int smoothing_half_window_length,
43 pappso_double tic_start,
44 pappso_double tic_stop);
46 virtual ~TraceDetectionMoulon();
47
48
49 void setFilterMorphoMean(const FilterMorphoMean &smooth);
50 void setTicStart(double tic_start);
51 void setTicStop(double tic_stop);
52
53 unsigned int getSmoothingHalfEdgeWindows() const;
54 pappso_double getTicStart() const;
55 pappso_double getTicStop() const;
56
57
58 void detect(const Trace &xic,
60 bool remove_peak_base) const override;
61};
62
63
64} // namespace pappso
mean filter apply mean of y values inside the window : this results in a kind of smoothing
Definition: filtermorpho.h:210
A simple container of DataPoint instances.
Definition: trace.h:148
#define PMSPP_LIB_DECL
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
Definition: aa.cpp:39
double pappso_double
A type definition for doubles.
Definition: types.h:50